Preliminary steps to run the Type Multiple Species workflow
Before starting the workflow,
- Download microbial genomes using either the Download Custom Microbial Reference Database or the Download Pathogen Reference Database tool (see the Working with databases chapter). Databases can also be created using the Create Annotated Sequence List.
- Download the MLST schemes using the Download MLST Schemes tool (see the Downloading schemes section).
- Download the database for the Find Resistance with Nucleotide DB tool using the Download Resistance Database tool (see the Download Resistance Database section).
- Create a New Result Metadata table using the Create Result Metadata Table tool (see the Create Result Metadata Table section).
Your Navigation Area should now look similar to the figure 24.32.
Figure 24.32: Overview of the Navigation area after downloading the databases and schemes necessary to run the workflows.