Realignment
- Realigned regions The number of regions that were subjected to local realignment, e.g. regions with long unaligned ends.
- Combined length of realigned regions The combined length of the locally realigned regions.
- Reassembled regions The number of regions that were subjected to reassembly, e.g. regions with significant unaligned end breakpoints.
- Combined length of reassembled regions The combined length of the reassembled regions.