LightSpeed Long Reads to Germline Variants (beta)
LightSpeed Long Reads to Germline Variants (beta) can produce the following outputs:
- Genotype track The identified germline variants including phasing information.
- Report A report providing information about each step, see Report for details.
- Reads track A read mapping. If a reads track is selected as output, runtime will be significantly increased.
- Unmapped reads Sequence lists containing reads that could not be mapped, one list for intact pairs and one for single reads where the mate could not be mapped.