LightSpeed Fastq to Somatic Variants Tumor Normal outputs
LightSpeed Fastq to Somatic Variants Tumor Normal can produce the following outputs:
- Somatic variant track The identified somatic variants.
- Ignored regions This output is deprecated. The track previously reported regions where variant detection was not possible due to high complexity. As this limitation has been resolved, the output is now empty and will be removed in a future release.
- Report A report providing information about each step, see Report for details.
- Tumor reads track A read mapping of the tumor reads. If a reads track is selected as output, runtime will be increased.
- Normal reads track A read mapping of the normal reads. If a reads track is selected as output, runtime will be increased.