Fastq to Germline CNV Control

The Fastq to Germline CNV Control template workflow produces coverage tables that can be used as controls for copy number variant detection.

The workflow can only be used with targeted data.

Use the workflow to generate coverage tables for the Fastq to Germline Variants (WES) template workflow (Fastq to Germline Variants (WES)).

Fastq to Germline CNV Control can be found at:

        Template Workflows | LightSpeed Workflows (Image lightspeed_wf_folder_open_16_n_p) | Fastq to Germline CNV Control (Image cnv_control_ls_16_n_p)

Options in the following dialogs can be configured:



Subsections