LightSpeed Fastq to Somatic Variants outputs
LightSpeed Fastq to Somatic Variants can produce the following outputs:
- Variant track The identified somatic variants.
- Inversions Inversions detected from indirect evidence.
- Ignored regions A track providing a list of regions where it was not possible to detect variants due to high complexity among the initial variants being tested.
- Report A report providing information about each step, see Report for details.
- Reads track A read mapping. If a reads track is selected as output, runtime will be increased.
- Unmapped reads Sequence lists containing reads that could not be mapped, one list for intact pairs and one for single reads where the mate could not be mapped.