LightSpeed Fastq to Somatic Variants outputs
LightSpeed Fastq to Somatic Variants can produce the following outputs:
- Variant track The identified somatic variants.
- Inversions Inversions detected from indirect evidence.
- Ignored regions This output is deprecated. The track previously reported regions where variant detection was not possible due to high complexity. As this limitation has been resolved, the output is now empty and will be removed in a future release.
- Report A report providing information about each step, see Report for details.
- Reads track A read mapping. If a reads track is selected as output, runtime will be increased.
- Unmapped reads Sequence lists containing reads that could not be mapped, one list for intact pairs and one for single reads where the mate could not be mapped.