Outputs from Fastq to Germline CNV Control
The Fastq to Germline CNV Control template workflow produces the following outputs:
- Coverage Table A table (
) providing coverage information per position in the target regions.
The coverage table can be used as control for copy number variant detection, either in the Fastq to Germline Variants (WES) (Fastq to Germline Variants (WES)) template workflow, or directly in the tool Copy Number Variant Detection (Targeted) (https://resources.qiagenbioinformatics.com/manuals/clcgenomicsworkbench/current/index.php?manual=Copy_Number_Variant_Detection.html).
- LightSpeed Report A report (
) summarizing details of each analysis step performed by the LightSpeed Fastq to Germline Variants tool.
- Sample Report A report () that contains compiled QC metrics from other reports and provides an overview of a given sample. The report contains a quality control section reflecting the summary items specified in the Create Sample Report wizard step.
- Coverage Report A report () summarizing coverage.
- Target Region Statistics Track A track (
) providing coverage information per target region.
The Coverage Table, Coverage Report, and the Target Region Statistics Track are produced by QC for Targeted Sequencing (https://resources.qiagenbioinformatics.com/manuals/clcgenomicsworkbench/current/index.php?manual=QC_Targeted_Sequencing.html).