Outputs from QIAseq xHYB Long Reads to Germline Variants (PacBio) (beta)
The QIAseq xHYB Long Reads to Germline Variants (PacBio) (beta) template workflow produces the following outputs:
- LightSpeed Report A report (
) summarizing details of each analysis step performed by LightSpeed Long Reads to Germline Variants (beta), see LightSpeed Long Reads to Germline Variants (beta).
- Structural Variant Caller for Long Reads Report A report () from Structural Variant Caller for Long Reads giving an overview over analyzed references and found structural variants.
- Coverage Report A report () from QC for Targeted Sequencing summarizing coverage.
- Sample Report A report () generated by Create Sample Report that contains compiled QC metrics from other reports and provides an overview of a given sample. The report contains a quality control section reflecting the summary items specified in the Create Sample Report wizard step.
- Germline Variants A Genotype track, see Genotype track, produced by LightSpeed Long Reads to Germline Variants (beta) with the annotated variants, see LightSpeed Long Reads to Germline Variants (beta).
- Amino Acid Track A track (
) providing a graphical representation of identified amino acid changes produced by Genotype Track Amino Acid Changes (beta), see Genotype Track Amino Acid Changes (beta).
- Indels A variant track (
) providing indels (length <= 100,000) called by Structural Variant Caller for Long Reads.
- Long Indels An annotation track (
) providing long indels (length > 100,000) called by Structural Variant Caller for Long Reads.
- Inversions An annotation track () providing the inversions called by Structural Variant Caller for Long Reads.
- Breakends An annotation track () providing the breakends called by Structural Variant Caller for Long Reads. There is a row for each breakend in a translocation.
- Read Mapping A read mapping track (
) with the mapped reads produced by LightSpeed Long Reads to Germline Variants (beta), see LightSpeed Long Reads to Germline Variants (beta).
- Target Region Statistics Track A track () providing coverage information per target region produced by QC for Targeted Sequencing.
- Gene Coverage Track An annotation track () providing coverage information at the gene level produced by QC for Targeted Sequencing.
- Genome Browser View A track list (
) containing the Germline Variants, the Indels, the Read Mapping, the Target Region Statistics Track, the Gene-level CNV Track, the Target regions as well as the Reference sequence and the Genes, mRNA and CDS tracks.