Outputs from QIAseq xHYB Long Reads to Germline Variants (PacBio) (beta)
The QIAseq xHYB Long Reads to Germline Variants (PacBio) (beta) template workflow produces the following outputs:
- Germline Variants A genotype track (
) with the annotated variants. LINK HERE
- LightSpeed Report A report (
) summarizing details of each analysis step performed by the LightSpeed Fastq to Germline Variants tool.
- Inversions An annotation track (
) providing the called inversions.
- Mapped Reads A read mapping track (
) with the mapped reads.
- Amino Acid Track A track (
) providing a graphical representation of identified amino acid changes.
- Genome Browser View A track list (
) containing the Variants, the Inversions, the Amino Acid Track, the Mapped UMI Reads, the Target Region Statistics Track, the Gene-level CNV Track, the Target regions as well as the Reference sequence and the Genes, mRNA and CDS tracks.
- Sample Report A report () that contains compiled QC metrics from other reports and provides an overview of a given sample. The report contains a quality control section reflecting the summary items specified in the Create Sample Report wizard step.
- Target Region Statistics Track A track () providing coverage information per target region.
- Coverage Report A report () summarizing coverage.
- Gene Coverage Track An annotation track () providing coverage informtion at the gene level.
The Amino Acid Track is produced by Amino Acid Changes (https://resources.qiagenbioinformatics.com/manuals/clcgenomicsworkbench/current/index.php?manual=Amino_Acid_Changes.html).
The Coverage Report, Target Region Statistics Track and the Gene Coverage Track are produced by QC for Targeted Sequencing (https://resources.qiagenbioinformatics.com/manuals/clcgenomicsworkbench/current/index.php?manual=QC_Targeted_Sequencing.html).