Export Cell Ranger HDF5 expression matrix

For export in Cell Ranger HDF5 format a number of parameters can be specified, see figure 3.2.

Image exporter_10x
Figure 3.2: Exposed parameters for export of expression matrix in Cell Ranger HDF5 format

Cell format can be specified to include both the sample and barcode. Hover the mouse over this setting to see the possible options. Often the barcode in itself is sufficient as a unique identifier of cells. However, when an expression matrix contains multiple samples, the cell format must also include the sample. NOTE: when a matrix contains more than one sample the exporter will fail if sample handling has not been defined properly.

Use compression select among gzip, zip or no compression which is default.

Output file name is the name of the file and can be customized by changing the default pattern in Custom file name.