CLC Genomics Workbench supports data from QIAGEN GeneReader. Choosing the QIAGEN GeneReader import will open the dialog shown in figure 6.9. This data type can also be imported using the on-the-fly import functionality available in workflows, described in Launching workflows individually and in batches.
The file formats accepted are Fastq *.fastq and *.fq. You can choose to discard read names during import.