Output from the Identify Known Mutations from Sample Mappings tool

One individual sample output track will be created for each read mapping analyzed, while one overview track will be created per analysis (figure 28.36).

Image identify_known_mutations_output_track
Figure 28.36: Overview track of read mappings tested against a Clinvar variant track.

At the bottom of the window it is possible to switch to a table view that lists all the mutations from the variant track that were found in your sample mapping.

In the individual track, the variant has been annotated with most classical variant track annotations (see Variant tracks), as well as:

In the overview track the variant has been annotated with the following information:

An example of the individual and overview tables can be seen in figure 28.37.

Image identify_known_mutations_output_table
Figure 28.37: Table views of the individual track (left) and overview track (right).