Running the QIAseq UPXome workflows

All QIAseq UPXome workflows can be run from the Analyze QIAseq Samples guide or standalone from the toolbox. The main difference between these is the way reference data is applied. When running from the guide all reference data is pre-configured, whereas when running the workflow directly from the toolbox, the Barcodes reference table must be loaded or imported. The reference data element can either be

All QIAseq UPXome workflows are designed to analyze all samples within an experiment without the need of batch functionality.

To run a workflow, first select the input reads, see figure 15.15.

Image upxomeselectreads
Figure 15.15: QIAseq UPXome workflows require multiplexed reads and analyze all samples within an experiment without the need of batch functionality.

Secondly select the wells used in the experiment. This is done in different ways depending on whether the workflow is run from the Analyze QIAseq Samples guide or the toolbox.

Finally, specify the save location for the workflow output.