Output from the Perform QIAseq Targeted TCR Analysis workflow
The following outputs are generated:
- Immune repertoire analysis and Filter immune repertoire report (). A report summarizing statistics of the detected and filtered clonotypes. See Output from the Immune Repertoire Analysis tool for details.
- Raw and Filtered clonotypes (). The unfiltered and filtered TCR clonotypes identified in the sample. See Clonotypes for details.
- Trimmed UMI reads (). The processed reads that are used for the clonotype identification.
- QC & Reports folder:
- Remove and annotate with UMI report (). A report summarizing the identified UMIs. See Remove and Annotate with Unique Molecular Index for details.
- Trim common sequence report (). A report summarizing trimming of the common sequence. See http://resources.qiagenbioinformatics.com/manuals/clcgenomicsworkbench/current/index.php?manual=Trim_Reads.html for details.
- UMI read report (). A report summarizing the identified UMI groups. See Create UMI Reads from Reads for details.
- Trim UMI reads report (). A report summarizing quality trimming of the UMI reads. See http://resources.qiagenbioinformatics.com/manuals/clcgenomicsworkbench/current/index.php?manual=Trim_Reads.html for details.
- Sample report (). A report containing essential information from all reports produced by the workflow. See http://resources.qiagenbioinformatics.com/manuals/clcgenomicsworkbench/current/index.php?manual=Create_Sample_Report.html for details.