Annotate CDS with Pfam Domains

The Annotate CDS with Pfam Domains tool will allow you to annotate a set of contigs containing CDS annotations with Pfam and GO terms. To start the analysis, go to:

        Toolbox | Microbial Genomics Module (Image mgm_folder_closed_flat_16_h_p) | Functional Analysis (Image functional_analysis_folder_closed_16_n_p) | Annotate CDS with Pfam Domains (Image annotate_cds_go_16_n_p)

The following parameters are available:

If you select Create report, the tool will create a summary report table. The report is divided in three parts

The tool will output a copy of the input file containing Pfam annotations when a Pfam domain was found in a CDS, as shown in figure 13.10. The annotation contains the following fields:

Image pfam_annotation
Figure 13.10: Pfam and GO annotations added to gene cds4 of h. pylori.

The tool can also output an annotation table summarizing information about the annotations added to the sequence list.