Export Cell Ranger HDF5 Expression Matrix
For export in Cell Ranger HDF5 format, a number of options can be specified (figure 3.2):
Figure 3.2: Options for export of expression matrix in Cell Ranger HDF5 format.
- Cell format. Can be specified to include both the sample and barcode. Hover the mouse over this setting to see the possible options. Often the barcode in itself is sufficient as a unique identifier of cells. However, when an expression matrix contains multiple samples, the cell format must also include the sample, otherwise the export will fail.
- Use compression. Select among gzip, zip or no compression which is default.
- Output file name. Shows the name of the file. This can be customized by changing the default pattern in Custom file name.