--algorithm <[NEIGHBOR_JOINING, UPGMA]> |
UPGMA: Algorithm which assumes a constant rate of evolution. Neighbor Joining: Algorithm which does not assume a constant rate of evolution. (default: NEIGHBOR_JOINING) |
-d, --destination <ClcServerObjectUrl> |
Destination file or folder on server. If not specified the folder of the first input object will be used. |
--distance-measure-nucleotide <[JUKES_CANTOR, KIMURA]> |
The distance measure to use for nucleotide sequences. Choose amongst Jukes-Cantor and Kimura-80. (default: JUKES_CANTOR) |
--distance-measure-protein <[JUKES_CANTOR, KIMURA_PROTEIN]> |
The distance measure to use for protein sequences. Choose amongst Jukes-Cantor and Kimura Protein. (default: JUKES_CANTOR) |
--do-bootstrap <Boolean> |
Resample data to estimate confidence in the tree (default: true) |
-i, --input <ClcObjectUrl> |
Input data on server |
--log <Boolean> |
Enable creation of algo log file. (default: true) |
--replicates |
|
Integer: 1 <= x <= 2147483647 |
Number of times to resample data (default: 100) |
