--chromosome-column-title <String> |
This column will be used to identify the chromosome (default: ) |
-d, --destination <ClcServerObjectUrl> |
Destination file or folder on server. If not specified the folder of the first input object will be used. |
--experiment-to-track-filter <Boolean> |
Filter based on the results of a statistical analysis previously executed on the experiment (default: false) |
--fold-change-cutoff |
|
Double: 0.0 <= x <= Infinity |
Minimum allowed fold-change value. The absolute value of the fold-change relevant for the chosen statistical test will be used. EDGE test: Fold change, T-test: Fold change, ANOVA: Max fold change, Kal's test: Proportions fold change, Baggerley's test: Weighted proportions fold change. (default: 1.5) |
-i, --input <ClcObjectUrl> |
Input data on server |
--log <Boolean> |
Enable creation of algo log file. (default: true) |
--p-value-cutoff |
|
Double: 0.0 <= x <= 1.0 |
Maximum allowed p-value (default: 0.05) |
--reference <ClcObjectUrl> |
Reference genome |
--region-end-column-title <String> |
This column will be used as the end of the region (default: ) |
--region-start-column-title <String> |
This column will be used as the start of the region (default: ) |
--source <[AUTOMATIC, REQUIRE_EXPERIMENT_INFO]> |
Select the source of genome information (default: REQUIRE_EXPERIMENT_INFO) |
--statistical-analysis <[EDGE_TEST_COMMON, EDGE_TEST_TAGWISE, TTEST_ORIGINAL, TTEST_TRANSFORMED, TTEST_NORMALIZED, ANOVA_ORIGINAL, ANOVA_TRANSFORMED, ANOVA_NORMALIZED, KALZPROPTEST_ORIGINAL, KALZPROPTEST_TRANSFORMED, KALZPROPTEST_NORMALIZED, BAGGERLEYTEST_ORIGINAL, BAGGERLEYTEST_TRANSFORMED, BAGGERLEYTEST_NORMALIZED]> |
Select the statistical analysis (default: EDGE_TEST_COMMON) |
--type-of-p-value <[P_VALUE, BONFERRONI, FDR]> |
Select the type of p-value to filter on (default: P_VALUE) |
