--barcodes-1 <String> |
A string describing the barcode setting for the single reads or first read of pair. An example of barcode of four bases in the beginning of the read and three samples. And expected length of the target sequences should be between 10 and 1000 bases. Example: "linker type#MULTIPLEX_BARCODE#fixedLength#4#sample keys#GATC/ACTG/GTGC#names#Patient 1/Patient 2/Patient 3;linker type#MULTIPLEX_SEQUENCE#minLength#10#maxLength#1000" (default: unpaired) |
--barcodes-2 <String> |
A string describing the barcode setting for the second read of pair (when present). For an example see "barcodes-1" (default: paired) |
--both-strands <Boolean> |
When barcode is not found on plus strand, we continue searching on minus strand. (default: false) |
--create-report <Boolean> |
Create report (default: true) |
--create-untagged <Boolean> |
Create a list of sequences that do not contain a barcode. (default: true) |
-d, --destination <ClcServerObjectUrl> |
Destination file or folder on server. If not specified the folder of the first input object will be used. |
-i, --input <ClcObjectUrl> |
Input data on server |
--log <Boolean> |
Enable creation of algo log file. (default: true) |
