-d, --destination <ClcServerObjectUrl> |
Destination file or folder on server. If not specified the folder of the first input object will be used. |
--distance <[EUCLIDIAN, MANHATTAN, ONE_MINUS_PEARSON]> |
Euclidean distance, "ordinary" straight line distance. The distance of (3,4) from the origin (0,0) is 5. Manhattan distance, also known as city-block distance. The distance of (3,4) from the origin (0,0) is 3+4=7. 1 ? Pearson correlation distance, distances are shortest between sets of values that are highly correlated or highly anti-correlated. (default: EUCLIDIAN) |
--f-track <ClcObjectUrl> |
Feature track with features that will be kept. All other features will be filtered out. |
--filtering-type <[NONE, THRESHOLD, STATISTICS, SPECIFICS]> |
Enables various options for filtering of the input. (default: THRESHOLD) |
-i, --input <ClcObjectUrl> |
Input data on server |
--linkage <[SINGLE, AVERAGE, COMPLETE]> |
Determines how distances are calculated between clusters. Single linkage, clusters are merged by the shortest distance between their members. This method can lead to 'chaining' where many clusters contain only a single value. Average linkage, clusters are merged by the mean distance between their members. Complete linkage, clusters are merged by the maximum distance between their members. (default: COMPLETE) |
--locked-names <String> |
Names of features that will be kept. All other features will be removed. Input the names using space, comma, or semicolon as a delimiter. |
--log <Boolean> |
Enable creation of algo log file. (default: true) |
--maximum-pvalue <Double> |
Maximum p-value (default: 0.05) |
--min-counts <Integer> |
The minimum number of counts allowed in a feature across samples. Any feature with no counts equal or above this value will be filtered. (default: 10) |
--minimum-foldchange <Double> |
Minimum fold change for a feature. (default: 1.5) |
--pvalue-type <[P_VALUE, FDR_CORRECTED, BONFERRONI_CORRECTED]> |
The type of p-value to filter on. (default: FDR_CORRECTED) |
--sc-track <ClcObjectUrl> |
A statistical comparison used to enable filtering on p-values and fold change |
--threshold <Integer> |
The number of features to keep. The features with the highest coefficient of variation (the ratio of the standard deviation to the mean) will be kept. (default: 25) |
