--create-individual-tracks <Boolean> |
Create tracks for each read mapping (default: true) |
--create-overview-track <Boolean> |
Create an overview track (default: true) |
-d, --destination <ClcServerObjectUrl> |
Destination file or folder on server. If not specified the folder of the first input object will be used. |
--detection-frequency |
|
Double: 0.0 <= x <= 100.0 |
The minimum frequency (in percent) required for positive detection, also used to determine zygosity (default: 20.0) |
-i, --input <ClcObjectUrl> |
Input data on server |
--ignore-broken-pairs <Boolean> |
When ticked, broken pair reads will be ignored. (default: false) |
--ignore-nonspecific-matches <Boolean> |
When ticked, reads that match in several places will be ignored (default: false) |
--include-partially-covering-reads <Boolean> |
When ticked, reads that partially cover variants will be included when calculating the results. This will enable detection of variants longer than the reads. Partial reads will be counted in favor of any variant it is compatible with (see manual). (default: false) |
--log <Boolean> |
Enable creation of algo log file. (default: true) |
--min-required-coverage |
|
Integer: 0 <= x <= 2147483647 |
The minimum coverage required for positive detection (default: 10) |
--variant-track <ClcObjectUrl> |
Select variant track |
