--apply-avg-quality-threshold <Boolean> |
Average base quality (default: true) |
--apply-freq-threshold <Boolean> |
Variant frequency (default: true) |
--apply-fwd-rev-balance-threshold <Boolean> |
Forward/reverse balance (default: true) |
--avg-quality-threshold |
|
Double: >= 0.0 |
Remove variants that have an average base quality below this threshold. (default: 20.0) |
-d, --destination <ClcServerObjectUrl> |
Destination file or folder on server. If not specified the folder of the first input object will be used. |
--freq-threshold |
|
Double: 0.0 <= x <= 100.0 |
Remove variants that have a frequency below this threshold. (default: 2.0) |
--fwd-rev-balance-threshold |
|
Double: 0.0 <= x <= 0.5 |
Remove variants that have a forward/reverse balance below this threshold. Note that an equal distribution of forward and reverse reads would result in a balance of 0.5, and a completely skewed distribution would result in a balance of 0. (default: 0.05) |
-i, --input <ClcObjectUrl> |
Input data on server |
--log <Boolean> |
Enable creation of algo log file. (default: true) |
