--accuracy <[FIFTY, SIXTY, SEVENTY, EIGHTY, NINETY, HUNDRED]> |
Required fraction of identity between sequence and specified motif (default: EIGHTY) |
--add-annotations <Boolean> |
Add motif annotations to the input sequences (default: true) |
--create-table <Boolean> |
Create and output a list of hits (default: true) |
-d, --destination <ClcServerObjectUrl> |
Destination file or folder on server. If not specified the folder of the first input object will be used. |
--exclude-n-matches <Boolean> |
Don't display search hit(s) for regions containing consecutive N's (default: false) |
-i, --input <ClcObjectUrl> |
Input data on server |
--include-negative-strand <Boolean> |
Include searching on the negative strand (default: false) |
--log <Boolean> |
Enable creation of algo log file. (default: true) |
--motif-list <ClcObjectUrl> |
The list of motifs that should be used in the search |
--motif-search-type <[SIMPLE, JAVA, PROSITE, MOTIF_LIST]> |
Motif Search Type (default: SIMPLE) |
--search-string <String> |
The pattern to search for |
