--choose-subset <[ONLY_MOST_STABLE, ALL]> |
Normalization mode (default: ONLY_MOST_STABLE) |
--comparisons <[ANOVALIKE, ALLPAIRS, AGAINSTREFERENCE]> |
Select groups to be compared (default: AGAINSTREFERENCE) |
--control-group <String> |
The comparison will be carried out against this reference (group name) |
--controlling-for <String> |
Factors that will be treated as confounding variables. For example, in a tumor/normal study, a confounding factor might be the sex of an individual. |
--custom-housekeeping-genes <String> |
Names of housekeeping genes. |
-d, --destination <ClcServerObjectUrl> |
Destination file or folder on server. If not specified the folder of the first input object will be used. |
--due-to <String> |
The chosen factor will be tested for differential expression. |
--housekeeping-genes-category <[HUMAN, MOUSE, CUSTOM]> |
Panel (default: HUMAN) |
-i, --input <ClcObjectUrl> |
Input data on server |
--log <Boolean> |
Enable creation of algo log file. (default: true) |
--metadata-table <ClcObjectUrl> |
Metadata table defining factors and groups for the statistical test |
--normalization-method <[TMM, HOUSEKEEPING_GENES]> |
Normalization method (default: TMM) |
--technology <[RNA_SEQ, TARGETED_RNA_SEQ, SMALL_RNA]> |
Technology (default: RNA_SEQ) |
