--create-report <Boolean> |
Create report (default: false) |
-d, --destination <ClcServerObjectUrl> |
Destination file or folder on server. If not specified the folder of the first input object will be used. |
-i, --input <ClcObjectUrl> |
Input data on server |
--log <Boolean> |
Enable creation of algo log file. (default: true) |
--save-duplicates <Boolean> |
When selected, this option will create a file to save the duplicates that were removed from the original. If this option is not enabled, duplicate reads are simply discarded from the newly created copy of the track used as input. (default: false) |
--threshold |
|
Double: 0.0 <= x <= 50.0 |
Increase the value when the sequencing error rate is high. This will allow more divergent reads to be considered duplicates. Decreasing the value means that reads have to be more similar in order to be considered duplicates. Note that this threshold only affects merging of reads that align at the same position and orientation. (default: 20.0) |
