--annotate <Boolean> |
Add pfam domain search annotations to input sequences. (default: true) |
--create-table <Boolean> |
Create table of pfam domain search results. (default: true) |
--cut-ga <Boolean> |
Use profile's gathering cutoffs specifically assigned to each family. (default: true) |
-d, --destination <ClcServerObjectUrl> |
Destination file or folder on server. If not specified the folder of the first input object will be used. |
--database <ClcObjectUrl> |
Pfam database to search. |
-i, --input <ClcObjectUrl> |
Input data on server |
--log <Boolean> |
Enable creation of algo log file. (default: true) |
--remove-clan-overlap <Boolean> |
Remove overlapping matches from the same clan in post-processing, keeping the entry with the smallest e-value in an overlapping area. (default: true) |
--significance-cutoff |
|
Double: 0.0 < x <= 10.0 |
Using an E-value much less than 1 will give a confident prediction. E-values around 1 is what is expected by chance. Thus, the lower the E-value, the more specific the search for domains will be. (default: 1.0) |
