--aspera-limit <Integer> |
The speed limit, in Mb/s, for downloads using Aspera. Requires '-enable-aspera true'. Mac and Linux only. |
-d, --destination <ClcServerObjectUrl> |
Destination file or folder on server. |
--discard-quality <Boolean> |
Quality scores are used in applications such as SNP detection. Discarding quality scores saves disk space, but is not generally recommended. (default: false) |
--discard-read-names <Boolean> |
For high-throughput sequencing data, the naming of the individual reads is often irrelevant. (default: false) |
--enable-aspera <Boolean> |
Enables Aspera downlaod when available (default: false) |
--log <Boolean> |
Enable creation of algo log file. (default: true) |
--ncbi-api-key <String> |
API key used for calling NCBI E-Utilities. |
--run-settings <String> |
run-settings (default: ) |
