--broken-pair-coverage <Boolean> |
Create broken pair coverage graph track (default: false) |
--coverage <Boolean> |
Create read coverage graph track (default: true) |
-d, --destination <ClcServerObjectUrl> |
Destination file or folder on server. If not specified the folder of the first input object will be used. |
-i, --input <ClcObjectUrl> |
Input data on server |
--log <Boolean> |
Enable creation of algo log file. (default: true) |
--multi-match-coverage <Boolean> |
Create non-specific read coverage graph track (default: false) |
--non-perfect-match-coverage <Boolean> |
Create non-perfect read coverage graph track (default: false) |
--paired-end-coverage <Boolean> |
Create paired read coverage graph track (default: false) |
--paired-end-distance <Boolean> |
Create paired end distance graph track (default: false) |
--reads-start-coverage <Boolean> |
Create reads start coverage graph track (default: false) |
--unaligned-ends-coverage <Boolean> |
Create unaligned ends coverage graph track (default: false) |
