-d, --destination <ClcServerObjectUrl> |
Destination file or folder on server. |
--discard-quality-scores <Boolean> |
Discard quality scores (default: false) |
--discard-seq-names <Boolean> |
Discard sequence names (default: false) |
-f <ClcFileUrl> |
Selected files |
--linker-sequence <String> |
Linker sequence (default: TCGTATAACTTCGTATAATGTATGCTATACGAAGTTATTACG) |
--log <Boolean> |
Enable creation of algo log file. (default: true) |
--max-distance |
|
Integer: >= 0 |
maximum distance (default: 500) |
--min-distance |
|
Integer: >= 0 |
minimum distance (default: 100) |
--paired-reads <Boolean> |
Paired-end reads (default: false) |
--read-orientation <[FORWARD_FORWARD, FORWARD_REVERSE, REVERSE_REVERSE, REVERSE_FORWARD, UNKNOWN]> |
Read orientation (default: FORWARD_FORWARD) |
--remove-adapter-sequence <Boolean> |
Remove adapter sequence (default: true) |
--use-clipping-information <Boolean> |
Use clipping information (default: true) |
