--annotation-types <String> |
Types of annotations to extract. Each type will give rise to its own track. |
--create-annotation-tracks <Boolean> |
Create tracks by extracting annotation data from input objects (default: true) |
--create-reads-track <Boolean> |
Create a reads track by extracting mapping data from input mapping (default: false) |
--create-sequence-track <Boolean> |
Create a reference genome track by extracting sequence data from input objects (default: true) |
-d, --destination <ClcServerObjectUrl> |
Destination file or folder on server. If not specified the folder of the first input object will be used. |
-i, --input <ClcObjectUrl> |
Input data on server |
--log <Boolean> |
Enable creation of algo log file. (default: true) |
--sort-chromosomes <Boolean> |
Sort sequences based on their names, where letters are sorted alphabetically and numbers are sorted numerically (default: true) |
