Running the "QC for Sequencing Reads" tool

The tool is found in the Toolbox:

        Toolbox | Quality Control (Image quality_control_closed_16_n_p) | QC for Sequencing Reads (Image qc_sequencing_reads_16_h_p)

Select one or more sequence lists with sequencing reads as input. If sequence lists in the Navigation Area were already selected, these will be shown in the Selected Elements window. When multiple lists are selected as an input, they are all analyzed in one pool. If you need separate reports for each data set, you can run it in a batch. Clicking Next allows you to set parameters as displayed in figure 19.11.

Image qc-step2
Figure 19.11: Setting parameters for quality control.

The following parameters can be set:

Click Next to adjust output options which allow you to select the graphical and supplementary report.