Identify QIAseq xHYB Germline Variants
The Identify QIAseq xHYB Germline Variants template workflow calls germline variants. It is suitable for data generated using QIAseq xHYB panels without addition of mitochondrial spike-in probes. If mitochondrial spike-in probes have been added, the Identify QIAseq xHYB Germline Variants including Mitochondrial should be used (see Identify QIAseq xHYB Germline Variants including Mitochondrial).
It can be found at:
Template Workflows | Biomedical Workflows (
) | QIAseq Sample Analysis (
) | QIAseq DNA workflows (
) | Identify QIAseq xHYB Germline Variants (
)
This workflow can also be launched from the Analyze QIAseq Samples guide, which is described in The Analyze QIAseq Samples guide. It is available under the xHYB Human tab.
If you are connected to a CLC Server via your Workbench, you will be asked where you would like to run the analysis. We recommend that you run the analysis on a CLC Server when possible.
The workflow steps and output file structure is similar to what is utilized for the Identify QIAseq Exome Germline Variants workflow, which is described in Identify QIAseq Exome Germline Variants. However, an additional filtering step has been introduced for Indels.
Subsections