Output from the Identify Causal Inherited Variants in a Trio (WGS) workflow
Five types of output are generated:
- Reads Tracks One for each family member. The reads mapped to the reference sequence.
- Variants in ... One track for each family member. The variants identified in each of the family members. The variant track can be opened in table view to see all information about the variants.
- Putative Causal Variants in Child The putative disease-causing variants identified in the child. The variant track can be opened in table view to see all information about the variants.
- Gene List with Putative Causal Variants Gene track with the identified putative causal variants in the child. The gene track can be opened in table view to see the gene names.
- An Amino Acid Track Shows the consequences of the variants at the amino acid level in the context of the original amino acid sequence. A variant introducing a stop mutation is illustrated with a red amino acid.
- Genome Browser View This is a collection of tracks shown together in a view that makes it easy to compare information from the individual tracks, such as compare the identified variants with the read mappings and information from databases.