Workflow matcher
A single sequencing run might produce multiple samples that should be submitted to different analysis workflows installed on the CLC Genomics Server. In order for the Analysis Automation Server Plugin to link samples to workflows, sample filenames must contain a unique ID that can be used to match them with the workflows to which they should be submitted.
To configure the workflow matcher setting, click the select-button and select a sample file from a previous sequencing run that contains the unique ID representing the desired workflow in its filename. This will populate the setting with the path to the selected file relative to the configured Sequencer folder, for example:
220522-000000_NDX1337_RUO_0001_XPNEKVSPRX/Data/Intensities/BaseCalls/Samples/HEPATITIS_GS342_S1_L001_R1_001.fastq.gz
Replace any part of the path that changes between sequencing runs with a wildcard (*) as described in Definition of wildcards, and also replace the parts of the filename that does not form the unique ID, for example:
*_NDX*_RUO_*_*/Data/Intensities/BaseCalls/Samples/HEPATITIS_*
If the workflow identifier is placed in the middle of the filename (e.g. GS342_HEPATITIS_S1_L001_R1_001.fastq.gz) the workflow matcher setting can be configured like so:
*_NDX*_RUO_*_*/Data/Intensities/BaseCalls/Samples/*_HEPATITIS_*