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• Introduction
• Installing the Analysis Automation Server Plugin
• Running analysis automation
  • Configuring user for running analysis automation service
  • Starting and stopping analysis automation service
  • Monitoring analysis automation service
    • Viewing job status and errors
    • Resetting submission statistics
• Configuring analysis automation
  • Managing automation configurations
    • Adding automation configuration
    • Editing automation configuration
    • Deleting automation configuration
    • Multi-configuration operations
    • Importing and exporting configurations
  • Concept definitions
    • Definition of sample completion
    • Definition of sample grouping
    • Definition of wildcards
    • Definition of placeholders
  • Configuration settings
    • Description
    • Enabled
    • Sequencer type
    • Sequencer folder
    • Workflow matcher
    • Sample completion
    • Sample sheet
    • Sample detection delay
    • Filename pattern
    • Files to ignore
    • Workflow
    • Sample types
    • Output folder
    • Export folder
    • Batch folder
    • Output prefix
    • Execution environment
    • Grid preset
    • File system location
    • Cloud preset
    • S3 bucket
• Troubleshooting
  • Accessing log file
  • Issues
    • Samples produced by sequencer were not submitted for analysis
    • Server cannot check if sequencer is done writing sample file to disk
• System requirements
  • Linux and macOS
    • Support for checking if sequencer is done writing sample file to disk
  • Windows
    • Path length limit

Enabled

Checkbox for enabling or disabling the configuration. Disabled configurations will be ignored when the analysis automation service is started as described in Starting and stopping analysis automation service.

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