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• Introduction to the CLC Genomics Cloud
  • Overview of CLC Genomics Cloud
  • CLC Genomics Cloud requirements
  • Contact information
• Setting up CLC Genomics Cloud resources on AWS
  • Setting up AWS resources
  • Adding more AWS Batch queues for CLC jobs
  • Adding more AWS IAM users
  • Deleting or redeploying CLC Genomics Cloud infrastructure on AWS
• Using a CLC Workbench to work on the cloud
  • Prerequisites for working on the cloud using a Workbench
  • Configuring an AWS Connection in the Workbench
  • Submitting analyses to AWS from a Workbench
  • Working with AWS S3 using the Remote Files tab
  • Accessing results from the Processes tab
• Using a CLC Server to work on the cloud
  • Benefits of submitting jobs via a CLC Server
  • AWS Connections in the CLC Server
  • Configuring cloud presets
  • Browse AWS S3 locations
  • Submitting workflows using the CLC Server Command Line Tools
• Using third party tools via CLC software
  • Integrating third party tools into CLC software
  • Using external applications on the cloud via a CLC Workbench
  • Upgrading external applications
• General information about inputs and results
  • General information about input data for cloud analyses
  • General information about outputs from cloud analyses
• Monitoring and reviewing CLC cloud jobs
  • Using a CLC Workbench to monitor and review cloud jobs
  • Using a CLC Server to monitor and review cloud jobs
  • Using the AWS Console to monitor and review cloud jobs
• Installing and uninstalling Workbench modules
  • Installation of modules
  • Licensing modules
  • Uninstalling modules
• Appendix
  • Standard AWS Batch queues for CLC Genomics Cloud
  • System file retention policies
  • Making custom plugins available for cloud analyses

Introduction to the CLC Genomics Cloud

This is the manual for QIAGEN CLC Cloud Module 23.0.1 and the corresponding Cloud Server Plugin. This manual also covers how to configure a CLC Genomics Cloud setup on AWS.

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Subsections

• Overview of CLC Genomics Cloud
• CLC Genomics Cloud requirements
• Contact information

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