When modifying an existing workflow or creating a custom workflow that include the tool "Create New Genome Browser View" you may want to be able to adjust the order in which the tracks are shown in the Genome Browser View. To do this, display a view of the workflow layout, click once on the top part of the tool "Create New Genome Browser View" labeled "Tracks" followed by a right-click. In the pop up menu that appears (figure 9.35), choose the option "Order Workflow Inputs".
This opens a new pop up window (figure 9.36 where you can see a list of all the inputs that are connected with the input channel of the "Create New Genome Browser View" tool. Use the arrows found in the left-hand side to move the tracks up or down until you have the desired track order in your Genome Browser View.
If the workflow also generated several variant tracks, the variant table generated from the uppermost read mapping will open in split view with the Genome Browser View. By changing the Order of Inputs you can thus also influence which variant table should open in split view.