Output from the Identify QIAseq Exome Germline Variants template workflow
The Identify QIAseq Exome Germline Variants template workflow produces a Genome Browser View (
) as well as the following files
- A QC graphical report (
) summarizing the QC for the reads in the sample analyzed
- A Mapping report () with information related to the mapping of the reads
- A Duplicates report () with details on the results of the removal of duplicate mapped reads.
- A Structural Variants Report () giving an overview of the different types of structural variants inferred by the Structural Variant analysis.
- A Read mapping (
)
- A Coverage report () and a Per region coverage track (
) from the QC for Target Sequencing tool (see http://resources.qiagenbioinformatics.com/manuals/clcgenomicsworkbench/current/index.php?manual=QC_Targeted_Sequencing.html)
- Three variant tracks (
) : Two from the Variant Caller: the Unfiltered Variants is output before the filtering steps, the Variants passing filters is the one used in the Genome Browser View (see
.
http://resources.qiagenbioinformatics.com/manuals/clcgenomicsworkbench/current/index.php?manual=_annotated_variant_table.html for a definition of the variant table content). The third is the Indels indirect evidence track produced by the Structural Variant Caller. This is also available in the Genome Browser View.
- An Amino acid track (
)
- If a read mapping was submitted in the Copy Number Variant Detection dialog, three CNV tracks () (Target-, Region- and Gene-level) and a CNV results report will be produced.
- A Combined report (
) summarizing all the results