Import VDJtools Clonotypes
The VDJtools Clonotypes format is a simple text file format of the VDJtools software package [Shugay et al., 2015].
To import this format, use the Standard Import tool:
Import (
) | Standard Import ()
Select VDJtools Clonotypes (.txt) in the Force import as type menu of the dialog.
The file format is tab-separated. The first line of the file must start with a '#' and describe the contents of the columns. An example first line is:
#count freq cdr3nt cdr3aa v d j VEnd DStart DEnd JStart
The following named columns must be present in the file: "count", "freq", "cdr3nt", "cdr3aa", "v", "j". All other columns are ignored during import.
For non-coding CDR3 sequences, the "cdr3aa" column may represent an incomplete codon using either "~" or "_".
The importer produces a TCR clonotypes element (
) and / or a BCR clonotypes element (
) (see Clonotypes), depending on the data found in the file.
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Note that:
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