Output from the Perform QIAseq Immune Repertoire Analysis workflow
The following outputs are generated:
- Immune repertoire report (). A report summarizing statistics of the detected filtered clonotypes. See Output from the Immune Repertoire Analysis tool for details.
- Clonotypes (). The filtered TCR clonotypes identified in the sample. See Clonotypes for details.
- Sample report (). A report containing essential information from all reports produced by the workflow. See http://resources.qiagenbioinformatics.com/manuals/clcgenomicsworkbench/current/index.php?manual=Create_Sample_Report.html for details.
- QC & Reports folder:
- Remove and annotate with UMI report (). A report summarizing the identified UMIs. See Remove and Annotate with Unique Molecular Index for details.
- UMI read report (). A report summarizing the identified UMI groups. See Create UMI Reads from Reads for details.
- Merge overlaps report (). A report summarizing how overlapping paired reads have been merged. See http://resources.qiagenbioinformatics.com/manuals/clcgenomicsworkbench/current/index.php?manual=Merge_Overlapping_Pairs.html for details.
- Trim merged and not merged reads report (). A report summarizing the performed trimming. See http://resources.qiagenbioinformatics.com/manuals/clcgenomicsworkbench/current/index.php?manual=Trim_Reads.html for details.
- Immune repertoire analysis report (). A report summarizing all detected clonotypes. See Output from the Immune Repertoire Analysis tool for details.
- Merge immune repertoire report (). A report summarizing merging of clonotypes. See Output from the Merge Immune Repertoire tool for details.
- Supplemental folder:
- Trimmed UMI merged and not merged reads (). The processed reads that were used for the clonotype identification.
- Raw clonotypes (). All TCR clonotypes identified in the sample. See Clonotypes for details.