Non-exclusive Algorithms
Below is a list of algorithms which are non-exclusive, meaning that multiple jobs of these types can be run concurrently on a given node, be that a single server, job or grid node.
Algorithms marked as Streaming are I/O intensive and two streaming algorithms will not be run at the same time. When running on grid, Streaming algorithms are treated as exclusive, meaning that they will never run in conjunction with other algorithms (or themselves).
Algorithm | Streaming | |
Add attB Sites | ||
Amino Acid Changes | X | |
Annotate and Merge Counts (legacy) | ||
Annotate from Known Variants | X | |
Annotate with Conservation Scores | X | |
Annotate with Exon Numbers | X | |
Annotate with Flanking Sequences | X | |
Annotate with Nearby Gene Information | ||
Annotate with Overlap Information | X | |
Assemble Sequences | ||
Assemble Sequences to Reference | ||
BLAST at NCBI | ||
ChIP-Seq Analysis | ||
ChIP-Seq Analysis (legacy) | ||
Compare Sample Variant Tracks (legacy) | X | |
Convert DNA To RNA | X | |
Convert from Tracks | X | |
Convert RNA to DNA | X | |
Convert to Tracks | X | |
Count-based statistical analysis | ||
Whole Genome Coverage Analysis | ||
Create Alignment | ||
Create BLAST Database | ||
QC for Read Mapping | ||
Create Entry Clone (BP) | ||
Create Expression Clone (LR) | ||
Create GC Content Graph Track | ||
Create Histogram | ||
Create Mapping Graph Tracks | ||
QC for Targeted Sequencing | ||
Create Track List | ||
Create Tree | ||
Demultiplex Reads | ||
Download 3D Protein Structure Database | X | |
Empirical Analysis of DGE | ||
Extract and Count (legacy) | ||
Extract Annotations | ||
Extract Consensus Sequence | ||
Extract Reads | ||
Extract Sequences | X | |
Fasta High-Throughput Sequencing Import | X | |
Remove Variants Present in Control Reads | X | |
Filter against Known Variants | X | |
Filter Annotations on Name | X | |
Filter Based on Overlap | X | |
Remove Marginal Variants | X | |
Remove Reference Variants (legacy) | X | |
Find Binding Sites and Create Fragments | ||
Find Open Reading Frames | ||
Identify Enriched Variants in Case vs Control Samples | X | |
GO Enrichment Analysis | ||
Identify Graph Threshold Areas | ||
Illumina High-Throughput Sequencing Import | X | |
Import SAM/BAM Mapping Files | X | |
Import Tracks from File | ||
InDels and Structural Variants | ||
Ion Torrent High-Throughput Sequencing Import | X | |
Link Variants to 3D Protein Structure | X | |
Merge Annotation Tracks | X | |
Merge Overlapping Pairs | ||
Merge Read Mappings | X | |
Motif Search | ||
Gaussian Statistical Analysis | ||
Predict Splice Site Effect | ||
Probabilistic Variant Detection | ||
Quality-based Variant Detection | ||
Reverse Complement Sequence | ||
Roche 454 High-Throughput Sequencing Import | X | |
Sanger High-Throughput Sequencing Import | X | |
Secondary Peak Calling | ||
Translate to Protein | ||
Trim Sequences | ||
TRIO analysis |