Selecting sequences for prediction
To start the Predict Secondary Structure tool, go to:
Tools | Classical Sequence Analysis (
) | RNA Structure (
)|
Predict Secondary Structure (
)
This opens the dialog shown in figure 26.1.
Figure 26.1: Selecting RNA or DNA sequences for structure prediction (DNA is folded as if it was RNA).
If you have selected sequences before running the tool, those sequences will be listed in the Selected Elements pane of the dialog. Use the arrows to add or remove sequences or sequence lists from the selected elements. You can use both DNA and RNA sequences - DNA will be folded as if it were RNA.