The Detect QIAseq Methylation ready-to-use workflow

The Detect QIAseq Methylation workflow calls methylation levels on targeted data.

It can be found here:

        Ready-to-Use Workflows | QIAseq Panel Analysis (Image qiaseqrna_folder_closed_16_n_p) | Detect QIAseq Methylation

The workflow takes as input reads sequenced with a QIAseq Targeted Methyl Panel kit. For convenience, process several samples at once using the batch mode highlighted in figure 13.1. Note that only Illumina paired-end sequencing is supported by this workflow at this point.

Image methylreads
Figure 13.1: Select QIAseq Targeted Methyl reads.

QIAseq panels are designed to use hg19 as reference, but custom panels can be designed against either hg19 or GRCh38. Custom primers can be imported with the Import QIAGEN Primer tool.