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Introduction
Genome finishing and working with shared data
Contact information
System requirements
Installing modules
Licensing modules
Uninstalling modules
Installing server extensions
Licensing server extensions
Align Contigs
How to run the Align Contigs tool
How to use the Align Contigs tool
The Contig table
The Contig match table
Joining two contigs
Splitting a contig
Adding new data
Analyze Contigs
How to run the Analyze Contigs tool
How to use the Analyze Contigs tool
The contig analysis table
How to edit data following contig analysis
Create Amplicons
How to run the Create Amplicons tool
Create Primers
How to use the Create Primers tool
Create Primers output
Primer scoring
Temperature calculation
Add Reads to Contigs
How to run the Add reads to contigs
Find Sequence
How to run the Find Sequence tool
The Find Sequence output
Collect Paired Read Statistics
How to run the Collect Paired Read Statistics tool
How to use the Collect Paired Read Statistics tool
Reassemble Regions
How to run Reassemble Regions
Extend Contigs
How to run Extend Contigs
Join Contigs
How to run the Join Contigs tool
Remove Extension of Contigs
How to run the Remove Extension of Contigs tool
Annotate from Reference
How to run the Annotate from Reference tool
Legacy tools and template workflows
Correct PacBio Reads
How to run the Correct PacBio Reads tool
Error-correction report
De Novo Assemble PacBio Reads
How to run the De Novo Assemble PacBio Reads tool
De Novo Assemble PacBio Reads report
PacBio De Novo Assembly Pipeline
Bibliography
Find Sequence
The Find Sequence tool makes it possible to search for sequence names, sequence strings or annotations in a set of objects.
Subsections
How to run the Find Sequence tool