Options for clc_convert_sequences
usage: clc_convert_sequences [options] <sequence file>
Convert a sequence file to fasta format.
Options:
-h / --help: Display this message.
-o <file> / --output <file>: Specify an output fasta file.
-q <file> / --fastq <file>: Output the result in fastq format (cannot be used with
the "-o" option)
-p / --paired: Keep pairs together.
-d / --discardname: Discard sequence name.
-m <n> / --minlength <n>: Set the minimum length for output sequences. For paired
reads, both reads will be removed if one read is shorter than the minimum length
-s <file> / --quality <file>: Specify separate input quality file.
-i <file1> <file2> / --interleave <file1> <file2>: Interleave two sequence
files with the same number of sequences. May be used instead of a single
file. This option automatically sets the "-p" option.