This section provides details of the command line options available for the clc_assembler command. As with all other programs in the CLC Assembly Cell, full usage information are given in Options and can be viewed by executing the command without any arguments.
Note that you can use the
clc_sequence_info program with the `-n' option to get statistics on the result of a de novo assembly. This is described in the Viewing and reporting tools section of the manual.
- Specifying the data for the assembly and how it should be used
- Specifying information for the assembly
- Specifying information about the outputs
- Other options
- Example commands