• Product manuals

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• Introduction to the Genomics Analysis Portal
  • Contact information
• Genomics Analysis Portal interface
  • Start an analysis using data stored locally
  • Start an analysis using data stored in BaseSpace
  • Analyses table
  • Sample analysis details panel
• Workflows for the Genomics Analysis Portal
  • Workflow creation and configuration
  • Workflow Installation
  • Workflow permissions settings
• Administration
  • BaseSpace configuration
    • HTTPS using Apache 2.4.x as a reverse proxy
    • Use Genomics Analysis Portal built-in support for HTTPS
    • Creating a PKCS12 keystore file
    • Create a new BaseSpace application
    • Configure BaseSpace connection from within Genomics Analysis Portal
  • Service user
  • Archiving and Cleanup
  • CLC Genomics Server administration for the Genomics Analysis Portal

Workflow Installation

Once your have created and configured your workflow, you can install it on the CLC Genomics Server. For this, you need to be member of the CLC Server admin group.

Workflows can be installed on the CLC Server from a CLC Genomics Workbench or through the web administrative interface of the CLC Genomics Server.

After installing a workflow on the CLC Server, you also need to set permissions to make it available through the Genomics Analysis Portal, as described in Workflow permissions settings.

Installing a workflow on the Server from the Workbench

Log into the CLC Genomics Server from the CLC Genomics Workbench as an administrative user and use the Workflow Manager to install the workflow.

Logging into the CLC Genomics Server is described at https://resources.qiagenbioinformatics.com/manuals/clcgenomicsworkbench/current/index.php?manual=CLC_Server_connection.html.

Installing workflows using the Workflow Manager is described at https://resources.qiagenbioinformatics.com/manuals/clcgenomicsworkbench/current/index.php?manual=Installing_workflow.html.

Installing a workflow on the Server using the web administrative interface

Workflows are installed using a .cpw file created using a CLC Genomics Workbench. To install the .cpw file, log into the CLC Genomics Server web administrative interface as an administrative user and then use functionality under
Admin | Workflows.

Creating workflow installer (.cpw) files is described at https://resources.qiagenbioinformatics.com/manuals/clcgenomicsworkbench/current/index.php?manual=Installing_workflow.html.

Installing workflows on the CLC Genomics Server using the web administrative interface is described at https://resources.qiagenbioinformatics.com/manuals/clcserver/current/admin/index.php?manual=Installing_configuring_workflows.html.

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