Sample analysis details panel

When an analysis is selected in the Analyses table, information about it is displayed in the Sample analysis details panel to the right. This includes basic information such as the sample ID, the name of the analysis workflow, and log entries (figure 2.6), as well as more detailed information, described below.

Image details_panel
Figure 6: The Sample analysis details panel lists information relating to a selected analysis.

Quality control

The Quality control section reports on the criteria and thresholds configured for the analysis workflow. A green icon (Image checkmark_green) signals that all QC criteria passed. A yellow icon (Image exclamationmark_yellow) flags a potential quality control issue. The text underneath lists the deviating criteria. The icon shown aligns with that presented in the Analyses table Status column.

Open workflow output

Under the Open workflow output heading are links to workflow outputs. Clicking on the links to these CLC format elements opens them in a CLC Genomics Workbench.

To open CLC format files by clicking on links, the following must be in place:

When you click a workflow output link, a dialog opens asking you to confirm you wish to open this file with the associated CLC Genomics Workbench (figure 2.7).

Image open_in_gwb
Figure 7: When you click on a workflow output link, you are asked to confirm that you wish to open the file using the relevant program for opening .clc files.

If not already running, the CLC Genomics Workbench will open and automatically log into the CLC Genomics Server sitting underneath the Genomics Analysis Portal.

Download workflow exports

If your workflow contains export elements, the Download workflow exports section will list the exported files. These are typically formats other than CLC, for example VCF, PDF, etc. If you click on an export link, the file will be saved to the location of your choice.