Download Database for Find Resistance
The Download Database for Find Resistance tool automatically downloads the database from https://cge.cbs.dtu.dk/services/data.php. To run the tool, go to:
Microbial Genomics Module (
) | Databases (
) | Download Database for Find Resistance (
)
Specify a location to save the database. We recommend to use a folder where you save all the databases and MLST schemes necessary to run the CLC Microbial Genomics Module tools. Click Finish.
The output is a sequence list that can be visualized as a table as well. In the table view, users can review the metadata associated with the sequences. It is possible to edit all metadata values, or to delete a gene in a resistance gene database such that users can keep their database up-to-date within the workbench.
It is also possible to merge two resistance gene databases, for example to merge a custom database with the one obtained using the Download Database for Find Resistance tool, or to add new genes to an existing database.