Add NGS MLST Report to Scheme

Once the MLST typing has been performed´, and in the rare cases that a new type has been identified, it is possible to use the generated Consensus NGS MLST Report as input for the Add NGS MLST Report to Scheme tool and hereby add new typing information to an existing MLST scheme.

        Microbial Genomics Module (Image mgm_folder_closed_flat_16_h_p) | Databases (Image databases_folder_closed_16_n_p) | NGS-MLST (Image ngs_mlst_16_n_p) | Add NGS MLST Report to Scheme (Image add_sequences_to_scheme_16_h_p)

Specify the report output file of the Identify MLST tool to be used (figure 15.15).

Image addmlst_toscheme1
Figure 15.15: Input file is the Consensus NGS MLST Report.

Then select the scheme you would like to add the newly found MLST type to (figure 15.16).

Image addmlst_toscheme2
Figure 15.16: Select the relevant MLST scheme for adding the reported MLST type.

Save the updated scheme in the folder where you have stored database and downloaded schemes.