Running the quality control tool

The tool is found in the Toolbox:

        Toolbox | NGS Core Tools (Image ngs_folder_open_16_n_p) | Create Sequencing QC Report (Image orderprimers)

Select one or more sequence lists with sequencing reads as input. If sequence lists in the Navigation Area were already selected, these will be shown in the Selected Elements window. When multiple lists are selected as an input, they are all analyzed in one pool. If you need separate reports for each data set, you can run it in a batch. Clicking Next allows you to set parameters as displayed in figure 25.43.

Image qc-step2
Figure 23.31: Setting parameters for quality control.

The following parameters can be set:

Click Next to adjust output options which allow you to select the graphical and supplementary report.